Validate each of the incoming Algorithm’s spec file
URI: https://
Name: bilayers_schema
Classes¶
| Class | Description |
|---|---|
| AbstractUserInterface | Abstract class for user interface |
| TypeDisplayOnly | Display only parameters of a specific Algorithm |
| TypeParameter | Parameters of a specific Algorithm |
| AbstractWorkflowDetails | Abstract class for details needed to fit config in the workflow |
| TypeInput | Inputs to the algorithm from the last step of the workflow |
| TypeOutput | Outputs of the algorithm to the next step in the workflow |
| Any | Any type |
| DockerImage | Description of docker_image for the specific algorithm |
| ExecFunction | Function to execute the Algorithm |
| HiddenArgs | Hidden arguments for the Algorithm |
| RadioOptions | Options of the Radio button in parameters, display_only |
| SpecContainer | SpecContianer class which holds all the high_level keywords from config.yaml file of specific algorithm |
| TypeAlgorithmFromCitation | Algorithm’s citations |
| TypeCitations | Citations of the Algorithm |
Slots¶
| Slot | Description |
|---|---|
| algorithm | Algorithm’s citations |
| algorithm | Main folder name of the algorithm to put the generated files in the folder |
| append_value | Append value of the hidden argument |
| citations | Citations of the Algorithm |
| cli_command | CLI command to execute the Algorithm |
| cli_order | Order of the CLI arguments |
| cli_tag | CLI tag of the object |
| default | Default value of the parameter |
| depth | whether z-dimension i |
| description | Description of the Algorithm |
| display_only | Display only parameters of a specific Algorithm |
| docker_image | Description of docker_image for the specific algorithm |
| doi | DOI of the Algorithm |
| exec_function | Function to execute the Algorithm |
| file_count | Type of Number of files |
| folder_name | Folder name of the object |
| format | Format of the inputs and outputs |
| hidden_args | Hidden arguments for the Algorithm |
| inputs | Inputs to the algorithm from the last step of the workflow |
| interactive | Whether the object is interactive on UI |
| label | Label of the object, but also Radio button’s label |
| license | License of the Algorithm |
| mode | Mode of the object |
| module | Module to execute the Algorithm |
| multiselect | Multiselect value of the dropdown |
| name | Name of the docker_image, algorithm, parameter, display_only |
| optional | Optional value of the object |
| options | Options of the Radio button in parameters, display_only |
| org | Organization of the docker image |
| output_dir_set | Output directory set |
| outputs | Outputs of the algorithm to the next step in the workflow |
| parameters | Parameters of a specific Algorithm |
| path | Path of the inputs and outputs |
| platform | Platform on which the docker image was built |
| pyramidal | whether pyramidal images are accepted via tool |
| script | Script to execute the Algorithm |
| section_id | Section ID of the object |
| subtype | Subtype of the inputs and outputs |
| tag | Tag of the docker image |
| tiled | whether tiled images are accepted via tool |
| timepoints | whether t-dimension i |
| type | Type of the inputs, parameters and outputs |
| value | Value of the hidden argument or RadioButton Option’s Value |
Enumerations¶
| Enumeration | Description |
|---|---|
| FileTypeEnum | Type of Number of files |
| ModeEnum | Mode of the parameters, display_only |
| SubTypeEnum | Subtype of the inputs and outputs, iff type is image |
| TypeEnum | Type of the parameters, display_only |
Types¶
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets¶
| Subset | Description |
|---|